SNP Report
Basic Infomation
| Name | rs35261542 dbSNP |
|---|---|
| Location | chr:6,20675792 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10440833 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2206734 | 0.90[ASN][1000 genomes] |
| rs35612982 | 0.91[ASN][1000 genomes] |
| rs4710941 | 0.90[ASN][1000 genomes] |
| rs67131976 | 0.91[ASN][1000 genomes] |
| rs6931514 | 0.88[EUR][1000 genomes] |
| rs7451008 | 0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7756992 | 0.97[EUR][1000 genomes] |
| rs7766070 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9348441 | 0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9350271 | 0.93[ASN][1000 genomes] |
| rs9356744 | 0.93[ASN][1000 genomes] |
| rs9368219 | 0.95[ASN][1000 genomes] |
| rs9368222 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDKAL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014