SNP Report

Basic Infomation

Name	rs7092394 dbSNP
Location	chr:10,82012310
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10887649	0.84[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap]
rs10887670	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10887710	0.83[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs11202403	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs12217395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12219032	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12355083	0.83[AMR][1000 genomes]
rs12411782	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12411806	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12773664	0.91[CHB][hapmap];0.95[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1298908	1.00[CHB][hapmap];0.98[CHD][hapmap];0.81[LWK][hapmap];0.85[ASN][1000 genomes]
rs2236568	0.83[CHB][hapmap]
rs2259547	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2573326	1.00[CHB][hapmap];0.98[CHD][hapmap];0.82[LWK][hapmap];0.85[ASN][1000 genomes]
rs28397083	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28433331	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2993763	0.83[CHB][hapmap];0.89[CHD][hapmap]
rs2994388	0.83[CHB][hapmap];0.89[CHD][hapmap]
rs3000954	0.87[CHB][hapmap];0.91[CHD][hapmap]
rs35213726	0.97[ASN][1000 genomes]
rs3827869	0.84[CHD][hapmap]
rs3851059	0.84[CHD][hapmap]
rs4933327	0.84[CHD][hapmap]
rs4934027	0.86[CHD][hapmap]
rs4934028	0.83[CHB][hapmap];0.89[CHD][hapmap]
rs7081164	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72644229	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72644230	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000204038	Proximal transcriptional regulation
EIF5AP4	Proximal transcriptional regulation
TMEM254	Distal transcriptional regulation
TMEM254-AS1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)