SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 20)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10887670	0.84[CHB][hapmap]
rs10887710	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11202403	0.96[CHB][hapmap];0.85[ASN][1000 genomes]
rs11202551	0.92[CHB][hapmap]
rs12217395	0.81[CHB][hapmap]
rs12219032	0.83[CHB][hapmap]
rs12411782	0.83[CHB][hapmap]
rs12411806	0.83[CHB][hapmap]
rs1298908	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs2259547	0.84[CHB][hapmap]
rs2573326	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs2993763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2994388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3827869	0.87[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs3851059	0.87[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs4933327	0.87[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs4934027	0.87[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs4934028	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7081164	0.83[CHB][hapmap]
rs7092394	0.83[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
MAT1A	Proximal transcriptional regulation
MAT1A	Distal transcriptional regulation
MAT1A	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)