SNP Report
Basic Infomation
| Name | rs10887670 dbSNP |
|---|---|
| Location | chr:10,81992815 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10788534 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10887649 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs10887669 | 0.83[EUR][1000 genomes] |
| rs10887710 | 0.83[CHB][hapmap] |
| rs11202165 | 0.80[ASN][1000 genomes] |
| rs11202248 | 0.93[ASN][1000 genomes] |
| rs12217395 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes] |
| rs12219032 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes] |
| rs12411782 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs12411806 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap] |
| rs12773664 | 0.91[CHB][hapmap] |
| rs1298908 | 1.00[CHB][hapmap] |
| rs2236568 | 0.84[CHB][hapmap] |
| rs2259547 | 1.00[CHB][hapmap];0.96[JPT][hapmap] |
| rs2573326 | 1.00[CHB][hapmap] |
| rs2993763 | 0.83[CHB][hapmap] |
| rs2994388 | 0.83[CHB][hapmap] |
| rs3000954 | 0.87[CHB][hapmap] |
| rs4934028 | 0.83[CHB][hapmap] |
| rs7081164 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes] |
| rs7092394 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000234382 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014