SNP Report
Basic Infomation
| Name | rs3000954 dbSNP |
|---|---|
| Location | chr:10,81972386 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10887649 | 0.83[CHB][hapmap];0.95[CHD][hapmap];0.82[ASN][1000 genomes] |
| rs10887670 | 0.87[CHB][hapmap] |
| rs12217395 | 0.90[CHB][hapmap] |
| rs12219032 | 0.87[CHB][hapmap];0.91[CHD][hapmap] |
| rs12411782 | 0.87[CHB][hapmap];0.91[CHD][hapmap] |
| rs12411806 | 0.87[CHB][hapmap];0.91[CHD][hapmap] |
| rs12773664 | 0.95[CHB][hapmap];0.95[CHD][hapmap] |
| rs1298908 | 0.87[CHB][hapmap];0.93[CHD][hapmap] |
| rs2259547 | 0.87[CHB][hapmap] |
| rs2573326 | 0.87[CHB][hapmap];0.93[CHD][hapmap] |
| rs2993763 | 0.83[CHD][hapmap] |
| rs2994388 | 0.83[CHD][hapmap] |
| rs3000953 | 0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3827869 | 0.83[CHB][hapmap];0.88[CHD][hapmap] |
| rs3851059 | 0.83[CHB][hapmap];0.88[CHD][hapmap] |
| rs4933327 | 0.83[CHB][hapmap];0.88[CHD][hapmap] |
| rs4934027 | 0.83[CHB][hapmap];0.86[CHD][hapmap] |
| rs4934028 | 0.83[CHD][hapmap] |
| rs7081164 | 0.87[CHB][hapmap];0.91[CHD][hapmap] |
| rs7092394 | 0.87[CHB][hapmap];0.91[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ANXA11 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| C10orf57 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014