SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10887649	0.84[CHD][hapmap]
rs10887670	0.83[CHB][hapmap]
rs10887710	1.00[CHB][hapmap];0.84[CHD][hapmap];0.85[ASN][1000 genomes]
rs11202403	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11202551	0.95[CHB][hapmap]
rs12217395	0.80[CHB][hapmap]
rs12219032	0.83[CHB][hapmap];0.89[CHD][hapmap]
rs12411782	0.83[CHB][hapmap];0.89[CHD][hapmap]
rs12411806	0.83[CHB][hapmap];0.89[CHD][hapmap]
rs12773664	0.84[CHD][hapmap]
rs1298908	0.83[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap]
rs2236568	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2259547	0.83[CHB][hapmap]
rs2573326	0.83[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap]
rs2993763	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.97[ASN][1000 genomes]
rs2994388	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.97[ASN][1000 genomes]
rs3000954	0.83[CHD][hapmap]
rs3827869	0.87[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs3851059	0.87[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs4933327	0.87[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs4934027	0.87[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs7081164	0.83[CHB][hapmap];0.89[CHD][hapmap]
rs7092394	0.83[CHB][hapmap];0.89[CHD][hapmap]

rSNP related genes

Symbol	Regulation type
MAT1A	Proximal transcriptional regulation
MAT1A	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)