SNP Report
Basic Infomation
| Name | rs72644229 dbSNP |
|---|---|
| Location | chr:10,82010728 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12217395 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12219032 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12355083 | 0.84[AMR][1000 genomes] |
| rs12411782 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12411806 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12773664 | 0.82[ASN][1000 genomes] |
| rs1298908 | 0.80[ASN][1000 genomes] |
| rs2259619 | 0.81[ASN][1000 genomes] |
| rs28397083 | 0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs28433331 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs35213726 | 0.95[ASN][1000 genomes] |
| rs56407831 | 0.82[ASN][1000 genomes] |
| rs7081164 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7092394 | 0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72644230 | 0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000204038 | Proximal transcriptional regulation |
| EIF5AP4 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014