SNP Report

Basic Infomation

Name	rs628595 dbSNP
Location	chr:11,64685482
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 48)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10488702	1.00[CEU][hapmap]
rs11827610	1.00[CEU][hapmap];0.94[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs12286941	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17146407	1.00[CEU][hapmap]
rs17146506	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs17146508	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap]
rs17146511	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs17146515	1.00[CEU][hapmap]
rs17146519	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs17146528	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs17146539	1.00[CEU][hapmap]
rs17146541	1.00[CEU][hapmap]
rs17146543	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs17146544	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs17146569	1.00[CEU][hapmap]
rs17146575	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs2904963	0.91[ASW][hapmap]
rs35079323	0.83[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35115827	0.86[EUR][1000 genomes]
rs3867127	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs3888184	1.00[CEU][hapmap]
rs4320955	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs57365630	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57393537	0.94[EUR][1000 genomes]
rs59677833	0.83[EUR][1000 genomes]
rs601047	0.81[ASW][hapmap]
rs601805	0.81[ASW][hapmap]
rs605688	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs606412	0.81[ASW][hapmap]
rs60711419	0.86[EUR][1000 genomes]
rs60798873	0.94[EUR][1000 genomes]
rs61024397	0.94[EUR][1000 genomes]
rs61741079	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61742063	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs619328	0.81[ASW][hapmap]
rs630585	0.81[ASW][hapmap]
rs632555	0.81[ASW][hapmap]
rs643949	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs646778	0.85[AFR][1000 genomes]
rs647489	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs677805	0.81[ASW][hapmap]
rs7102350	1.00[CEU][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs7103328	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs7113751	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7123368	1.00[CEU][hapmap]
rs7482817	1.00[CEU][hapmap]
rs7942472	1.00[CEU][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs885999	0.94[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ATG2A	Proximal transcriptional regulation
FAU	Distal transcriptional regulation
MRPL49	Distal transcriptional regulation
SF1	Distal transcriptional regulation
ENSG00000269038	Distal transcriptional regulation
EHD1	Distal transcriptional regulation
ENSG00000203400	Distal transcriptional regulation
ENSG00000267804	Distal transcriptional regulation
MIR192	Distal transcriptional regulation
MIR194-2	Distal transcriptional regulation
ENSG00000229719	Distal transcriptional regulation
ATG2A	Distal transcriptional regulation
SYVN1	Distal transcriptional regulation
VPS51	Distal transcriptional regulation
ENSG00000254501	Distal transcriptional regulation
TM7SF2	Distal transcriptional regulation
C11orf85	Distal transcriptional regulation
PPP2R5B	Distal transcriptional regulation
ARL2	Distal transcriptional regulation
SNX15	Distal transcriptional regulation
BATF2	Distal transcriptional regulation
SAC3D1	Distal transcriptional regulation
GPHA2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)