SNP Report

Basic Infomation

Name	rs17146575 dbSNP
Location	chr:11,64780509
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 32)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10488702	1.00[CEU][hapmap]
rs11231923	0.97[EUR][1000 genomes]
rs11824646	0.97[EUR][1000 genomes]
rs11827610	1.00[CEU][hapmap];0.94[GIH][hapmap];0.85[MEX][hapmap]
rs17146407	1.00[CEU][hapmap]
rs17146506	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs17146508	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes]
rs17146511	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes]
rs17146515	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs17146519	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes]
rs17146528	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes]
rs17146539	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs17146541	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17146543	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17146544	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17146569	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35079323	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs3867127	1.00[CEU][hapmap]
rs3888184	1.00[CEU][hapmap]
rs4081424	0.97[EUR][1000 genomes]
rs4320955	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes]
rs58187497	0.92[AMR][1000 genomes]
rs58717149	0.87[EUR][1000 genomes]
rs60401184	0.92[AMR][1000 genomes]
rs60935617	0.85[AMR][1000 genomes]
rs628595	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap]
rs7102350	1.00[CEU][hapmap];0.85[MEX][hapmap]
rs7103328	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes]
rs7113751	1.00[CEU][hapmap]
rs7123368	1.00[CEU][hapmap]
rs7482817	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs7942472	1.00[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
SNX15	Proximal transcriptional regulation
ARL2	Proximal transcriptional regulation
ATG2A	Distal transcriptional regulation
PPP2R5B	Distal transcriptional regulation
VPS51	Distal transcriptional regulation
ENSG00000254501	Distal transcriptional regulation
TM7SF2	Distal transcriptional regulation
ENSG00000255173	Distal transcriptional regulation
ZNHIT2	Distal transcriptional regulation
FAU	Distal transcriptional regulation
MRPL49	Distal transcriptional regulation
CDCA5	Distal transcriptional regulation
ZFPL1	Distal transcriptional regulation
SAC3D1	Distal transcriptional regulation
CAPN1	Distal transcriptional regulation
ENSG00000254614	Distal transcriptional regulation
APPBP2	Distal transcriptional regulation
ENSG00000259349	Distal transcriptional regulation
ENSG00000266123	Distal transcriptional regulation
SYVN1	Distal transcriptional regulation
NAALADL1	Distal transcriptional regulation
EHD1	Distal transcriptional regulation
SNX15	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)