SNP Report
Basic Infomation
| Name | rs17146569 dbSNP |
|---|---|
| Location | chr:11,64779396 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10488702 | 1.00[CEU][hapmap] |
| rs11231923 | 0.97[EUR][1000 genomes] |
| rs11824646 | 0.97[EUR][1000 genomes] |
| rs11827610 | 1.00[CEU][hapmap] |
| rs17146407 | 1.00[CEU][hapmap] |
| rs17146506 | 1.00[CEU][hapmap] |
| rs17146508 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes] |
| rs17146511 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes] |
| rs17146515 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes] |
| rs17146519 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes] |
| rs17146528 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes] |
| rs17146539 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes] |
| rs17146541 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs17146543 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17146544 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs17146575 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35079323 | 1.00[CEU][hapmap] |
| rs3867127 | 1.00[CEU][hapmap] |
| rs3888184 | 1.00[CEU][hapmap] |
| rs4081424 | 0.97[EUR][1000 genomes] |
| rs4320955 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes] |
| rs58187497 | 0.92[AMR][1000 genomes] |
| rs58717149 | 0.87[EUR][1000 genomes] |
| rs60401184 | 0.92[AMR][1000 genomes] |
| rs60935617 | 0.85[AMR][1000 genomes] |
| rs628595 | 1.00[CEU][hapmap] |
| rs7102350 | 1.00[CEU][hapmap] |
| rs7103328 | 1.00[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs7113751 | 1.00[CEU][hapmap] |
| rs7123368 | 1.00[CEU][hapmap] |
| rs7482817 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes] |
| rs7942472 | 1.00[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SNX15 | Proximal transcriptional regulation |
| ARL2 | Proximal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| ENSG00000254501 | Distal transcriptional regulation |
| TM7SF2 | Distal transcriptional regulation |
| ENSG00000255173 | Distal transcriptional regulation |
| ZNHIT2 | Distal transcriptional regulation |
| FAU | Distal transcriptional regulation |
| MRPL49 | Distal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
| ENSG00000266123 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014