SNP Report
Basic Infomation
| Name | rs7102350 dbSNP |
|---|---|
| Location | chr:11,64659837 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10488702 | 1.00[CEU][hapmap] |
| rs11827610 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12286941 | 0.94[EUR][1000 genomes] |
| rs17146407 | 1.00[CEU][hapmap] |
| rs17146506 | 1.00[CEU][hapmap];0.85[MEX][hapmap] |
| rs17146508 | 1.00[CEU][hapmap] |
| rs17146511 | 1.00[CEU][hapmap];0.85[MEX][hapmap] |
| rs17146515 | 1.00[CEU][hapmap] |
| rs17146519 | 1.00[CEU][hapmap];0.85[MEX][hapmap] |
| rs17146528 | 1.00[CEU][hapmap];0.85[MEX][hapmap] |
| rs17146539 | 1.00[CEU][hapmap] |
| rs17146541 | 1.00[CEU][hapmap] |
| rs17146543 | 1.00[CEU][hapmap];0.85[MEX][hapmap] |
| rs17146544 | 1.00[CEU][hapmap];0.85[MEX][hapmap] |
| rs17146569 | 1.00[CEU][hapmap] |
| rs17146575 | 1.00[CEU][hapmap];0.85[MEX][hapmap] |
| rs35079323 | 1.00[CEU][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs35115827 | 0.91[EUR][1000 genomes] |
| rs3867127 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs3888184 | 1.00[CEU][hapmap] |
| rs4320955 | 1.00[CEU][hapmap];0.85[MEX][hapmap] |
| rs57365630 | 0.94[EUR][1000 genomes] |
| rs59677833 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs60711419 | 0.91[EUR][1000 genomes] |
| rs61741079 | 0.94[EUR][1000 genomes] |
| rs61742063 | 0.94[EUR][1000 genomes] |
| rs628595 | 1.00[CEU][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs643949 | 0.83[EUR][1000 genomes] |
| rs7103328 | 1.00[CEU][hapmap];0.85[MEX][hapmap] |
| rs7113751 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs7123368 | 1.00[CEU][hapmap] |
| rs7482817 | 1.00[CEU][hapmap] |
| rs7942472 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| EHD1 | Proximal transcriptional regulation |
| ENSG00000203400 | Proximal transcriptional regulation |
| MIR194-2 | Proximal transcriptional regulation |
| MIR192 | Proximal transcriptional regulation |
| ENSG00000267804 | Proximal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| ENSG00000269290 | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| FZD1 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014