SNP Report
Basic Infomation
| Name | rs643949 dbSNP |
|---|---|
| Location | chr:11,64684283 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11827610 | 0.83[EUR][1000 genomes] |
| rs12286941 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs35079323 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs35115827 | 0.86[EUR][1000 genomes] |
| rs3867127 | 0.80[EUR][1000 genomes] |
| rs57365630 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs57393537 | 0.94[EUR][1000 genomes] |
| rs59677833 | 0.83[EUR][1000 genomes] |
| rs605688 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs60711419 | 0.86[EUR][1000 genomes] |
| rs60798873 | 0.94[EUR][1000 genomes] |
| rs61024397 | 0.94[EUR][1000 genomes] |
| rs61741079 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs61742063 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs628595 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs646778 | 0.86[AFR][1000 genomes] |
| rs647489 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7102350 | 0.83[EUR][1000 genomes] |
| rs7113751 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7942472 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs885999 | 0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PPP2R5B | Proximal transcriptional regulation |
| ATG2A | Proximal transcriptional regulation |
| PHC2 | Distal transcriptional regulation |
| ZNFX1 | Distal transcriptional regulation |
| ZFAS1 | Distal transcriptional regulation |
| SNORD12C | Distal transcriptional regulation |
| FBXW11 | Distal transcriptional regulation |
| PPIA | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| ENSG00000203400 | Distal transcriptional regulation |
| ENSG00000267804 | Distal transcriptional regulation |
| MIR192 | Distal transcriptional regulation |
| MIR194-2 | Distal transcriptional regulation |
| ENSG00000229719 | Distal transcriptional regulation |
| ATG2A | Distal transcriptional regulation |
| GPHA2 | Distal transcriptional regulation |
| SYVN1 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| ENSG00000254501 | Distal transcriptional regulation |
| TM7SF2 | Distal transcriptional regulation |
| C11orf85 | Distal transcriptional regulation |
| PPP2R5B | Distal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| ENSG00000255058 | Distal transcriptional regulation |
| SAC3D1 | Distal transcriptional regulation |
| ATG2A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014