SNP Report
Name | rs885999   dbSNP |
---|---|
Location | chr:11,64695020 |
Allele | T/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs12286941 | 0.83[EUR][1000 genomes] |
rs17146506 | 0.84[EUR][1000 genomes] |
rs35079323 | 0.83[EUR][1000 genomes] |
rs35115827 | 0.81[EUR][1000 genomes] |
rs4320955 | 0.84[EUR][1000 genomes] |
rs57365630 | 0.83[EUR][1000 genomes] |
rs57393537 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs60401184 | 0.84[EUR][1000 genomes] |
rs605688 | 0.90[EUR][1000 genomes] |
rs60711419 | 0.81[EUR][1000 genomes] |
rs60798873 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs60935617 | 0.84[EUR][1000 genomes] |
rs61024397 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61741079 | 0.83[EUR][1000 genomes] |
rs61742063 | 0.83[EUR][1000 genomes] |
rs628595 | 0.94[EUR][1000 genomes] |
rs643949 | 0.94[EUR][1000 genomes] |
rs647489 | 1.00[EUR][1000 genomes] |
rs7113751 | 0.83[EUR][1000 genomes] |
rs7482817 | 0.84[EUR][1000 genomes] |
rs7942472 | 0.83[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
PPP2R5B | Proximal transcriptional regulation |
GPHA2 | Distal transcriptional regulation |
BATF2 | Distal transcriptional regulation |
ATG2A | Distal transcriptional regulation |
PPP2R5B | Distal transcriptional regulation |
PPP2R5B | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014