SNP Report
Basic Infomation
| Name | rs60401184 dbSNP |
|---|---|
| Location | chr:11,64710559 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10488702 | 0.95[EUR][1000 genomes] |
| rs17146506 | 1.00[EUR][1000 genomes] |
| rs17146508 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17146511 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17146515 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17146519 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17146528 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17146539 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17146541 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs17146543 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17146544 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17146569 | 0.92[AMR][1000 genomes] |
| rs17146575 | 0.92[AMR][1000 genomes] |
| rs4320955 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57393537 | 0.84[EUR][1000 genomes] |
| rs58187497 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs60798873 | 0.84[EUR][1000 genomes] |
| rs60935617 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61024397 | 0.84[EUR][1000 genomes] |
| rs647489 | 0.84[EUR][1000 genomes] |
| rs7482817 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs885999 | 0.84[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C11orf85 | Proximal transcriptional regulation |
| C11orf85 | Distal transcriptional regulation |
| PPP2R5B | Distal transcriptional regulation |
| C11orf85 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014