SNP Report
Basic Infomation
| Name | rs10488702 dbSNP |
|---|---|
| Location | chr:11,64700976 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11827610 | 1.00[CEU][hapmap] |
| rs17146407 | 1.00[CEU][hapmap] |
| rs17146506 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs17146508 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes] |
| rs17146511 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs17146515 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes] |
| rs17146519 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes] |
| rs17146528 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes] |
| rs17146539 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes] |
| rs17146541 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs17146543 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs17146544 | 1.00[CEU][hapmap];1.00[YRI][hapmap] |
| rs17146569 | 1.00[CEU][hapmap] |
| rs17146575 | 1.00[CEU][hapmap] |
| rs35079323 | 1.00[CEU][hapmap] |
| rs3867127 | 1.00[CEU][hapmap] |
| rs3888184 | 1.00[CEU][hapmap] |
| rs4320955 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes] |
| rs58187497 | 0.84[EUR][1000 genomes] |
| rs60401184 | 0.95[EUR][1000 genomes] |
| rs60935617 | 0.95[EUR][1000 genomes] |
| rs628595 | 1.00[CEU][hapmap] |
| rs7102350 | 1.00[CEU][hapmap] |
| rs7103328 | 1.00[CEU][hapmap] |
| rs7113751 | 1.00[CEU][hapmap] |
| rs7123368 | 1.00[CEU][hapmap] |
| rs7482817 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes] |
| rs7942472 | 1.00[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| EHD1 | Distal transcriptional regulation |
| ATG2A | Distal transcriptional regulation |
| PPP2R5B | Distal transcriptional regulation |
| GPHA2 | Distal transcriptional regulation |
| PPP2R5B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014