SNP Report
Name | rs6130978   dbSNP |
---|---|
Location | chr:20,44588405 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1111750 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16990964 | 0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs16990971 | 1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs16991048 | 1.00[MEX][hapmap] |
rs16991059 | 1.00[MEX][hapmap] |
rs1810322 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs197663 | 1.00[MEX][hapmap] |
rs197666 | 1.00[MEX][hapmap] |
rs197667 | 1.00[MEX][hapmap] |
rs2297194 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34240177 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3746495 | 1.00[TSI][hapmap] |
rs3848718 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6104432 | 1.00[MEX][hapmap] |
rs6124760 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6130967 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs6130969 | 0.84[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs6130975 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6130976 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6130977 | 0.82[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8184490 | 0.91[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
ZNF335 | Distal transcriptional regulation |
TNNC2 | Distal transcriptional regulation |
SNX21 | Distal transcriptional regulation |
ZNF335 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
FCRLA | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014