SNP Report
Name | rs197667   dbSNP |
---|---|
Location | chr:20,44471153 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1111750 | 1.00[MEX][hapmap] |
rs169103 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs16990971 | 1.00[MEX][hapmap] |
rs197663 | 1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs197664 | 0.99[AFR][1000 genomes] |
rs197665 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs197666 | 1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2297194 | 1.00[MEX][hapmap] |
rs453287 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6104432 | 1.00[MEX][hapmap] |
rs6130977 | 1.00[MEX][hapmap] |
rs6130978 | 1.00[MEX][hapmap] |
rs73291275 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs811844 | 1.00[GIH][hapmap] |
Symbol | Regulation type |
---|---|
SNX21 | Proximal transcriptional regulation |
TNNC2 | Distal transcriptional regulation |
SNX21 | Distal transcriptional regulation |
ACOT8 | Distal transcriptional regulation |
ZSWIM3 | Distal transcriptional regulation |
NEURL2 | Distal transcriptional regulation |
CTSA | Distal transcriptional regulation |
PCIF1 | Distal transcriptional regulation |
SNX21 | RNA binding protein mediated regulation |
ACOT8 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014