SNP Report
Basic Infomation
| Name | rs16990971 dbSNP |
|---|---|
| Location | chr:20,44601293 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1111750 | 1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs16990964 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs16991048 | 1.00[MEX][hapmap] |
| rs16991059 | 1.00[MEX][hapmap] |
| rs1810322 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs197663 | 1.00[MEX][hapmap] |
| rs197666 | 1.00[MEX][hapmap] |
| rs197667 | 1.00[MEX][hapmap] |
| rs2297194 | 1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs34240177 | 1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3746495 | 1.00[TSI][hapmap] |
| rs3848718 | 1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6104432 | 1.00[MEX][hapmap] |
| rs6124760 | 1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6130967 | 0.96[ASN][1000 genomes] |
| rs6130969 | 0.96[ASN][1000 genomes] |
| rs6130975 | 1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6130976 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6130977 | 1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6130978 | 1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs8184490 | 0.91[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZNF335 | Proximal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| RBBP7 | Distal transcriptional regulation |
| UBE2C | Distal transcriptional regulation |
| ZSWIM1 | Distal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| PLTP | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| SLC35C2 | Distal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| ENSG00000203346 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| KAT6B | Distal transcriptional regulation |
| MMP9 | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| FTLP1 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| ENSG00000247728 | Distal transcriptional regulation |
| ARHGAP11B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| GAK | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014