SNP Report
Name | rs6130976   dbSNP |
---|---|
Location | chr:20,44579572 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1111750 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs16990964 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs16990971 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1810322 | 0.91[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2297194 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs34240177 | 0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs3848718 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6124760 | 0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6130967 | 0.88[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs6130969 | 0.88[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs6130975 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6130977 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6130978 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs8184490 | 0.82[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
SNX13 | Distal transcriptional regulation |
CTSA | Distal transcriptional regulation |
ZNF335 | Distal transcriptional regulation |
TNNC2 | Distal transcriptional regulation |
SNX21 | Distal transcriptional regulation |
ZNF335 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014