SNP Report
Basic Infomation
| Name | rs6130976 dbSNP |
|---|---|
| Location | chr:20,44579572 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1111750 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs16990964 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs16990971 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1810322 | 0.91[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2297194 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs34240177 | 0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3848718 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6124760 | 0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6130967 | 0.88[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6130969 | 0.88[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6130975 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6130977 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6130978 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs8184490 | 0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SNX13 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| ZNF335 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014