SNP Report
Name | rs3746495   dbSNP |
---|---|
Location | chr:20,44479794 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10582052 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs1111750 | 1.00[TSI][hapmap] |
rs11569655 | 0.83[EUR][1000 genomes] |
rs11569657 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11569662 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16990971 | 1.00[TSI][hapmap] |
rs2297194 | 1.00[TSI][hapmap] |
rs3746524 | 0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs3746525 | 0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs3827040 | 0.84[JPT][hapmap] |
rs57012406 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs57456861 | 1.00[EUR][1000 genomes] |
rs58173141 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs58334571 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs60570356 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs60596229 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6094217 | 0.90[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs60978433 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6130931 | 0.88[CHB][hapmap] |
rs6130940 | 1.00[CHB][hapmap];0.94[CHD][hapmap] |
rs6130977 | 1.00[TSI][hapmap] |
rs6130978 | 1.00[TSI][hapmap] |
rs61575830 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs811844 | 1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[JPT][hapmap] |
Symbol | Regulation type |
---|---|
ACOT8 | Proximal transcriptional regulation |
CTSA | Distal transcriptional regulation |
ACOT8 | Distal transcriptional regulation |
ZSWIM3 | Distal transcriptional regulation |
ACOT8 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014