SNP Report
Basic Infomation
| Name | rs6094217 dbSNP |
|---|---|
| Location | chr:20,44486130 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10582052 | 0.90[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11569657 | 0.80[AMR][1000 genomes] |
| rs11569662 | 0.80[AMR][1000 genomes] |
| rs3746495 | 0.90[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3746524 | 0.90[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3746525 | 0.90[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3827040 | 0.83[ASN][1000 genomes] |
| rs57012406 | 0.90[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs57456861 | 0.89[ASN][1000 genomes] |
| rs58173141 | 0.90[ASN][1000 genomes] |
| rs58334571 | 0.90[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6032576 | 0.83[ASN][1000 genomes] |
| rs60570356 | 0.90[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs60596229 | 0.90[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs60978433 | 0.90[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs61575830 | 0.90[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ACOT8 | Proximal transcriptional regulation |
| ZSWIM3 | Proximal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| ZSWIM1 | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| UBE2C | Distal transcriptional regulation |
| SPATA25 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014