SNP Report
Basic Infomation
| Name | rs3827040 dbSNP |
|---|---|
| Location | chr:20,44515559 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1057275 | 1.00[TSI][hapmap] |
| rs1057276 | 1.00[TSI][hapmap] |
| rs10582052 | 0.92[ASN][1000 genomes] |
| rs11569662 | 1.00[CHB][hapmap] |
| rs11698486 | 1.00[TSI][hapmap] |
| rs12480250 | 1.00[TSI][hapmap] |
| rs13040683 | 1.00[TSI][hapmap] |
| rs170800 | 1.00[TSI][hapmap] |
| rs3746495 | 0.84[JPT][hapmap] |
| rs3746524 | 0.86[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs3746525 | 0.86[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs57456861 | 1.00[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs58173141 | 0.92[ASN][1000 genomes] |
| rs6032576 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6065890 | 1.00[TSI][hapmap] |
| rs6094217 | 0.83[ASN][1000 genomes] |
| rs61575830 | 0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CTSA | Proximal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| PLTP | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| SPATA25 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014