SNP Report
Basic Infomation
| Name | rs60596229 dbSNP |
|---|---|
| Location | chr:20,44468746 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10582052 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11569655 | 0.83[EUR][1000 genomes] |
| rs11569657 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11569662 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3746495 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3746524 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3746525 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57012406 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57456861 | 1.00[EUR][1000 genomes] |
| rs58173141 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58334571 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60570356 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6094217 | 0.90[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs60978433 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61575830 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| SNX21 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014