SNP Report
Basic Infomation
| Name | rs6130931 dbSNP |
|---|---|
| Location | chr:20,44415165 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11569662 | 0.82[CHB][hapmap] |
| rs3746495 | 0.88[CHB][hapmap] |
| rs3746524 | 0.86[CHB][hapmap] |
| rs3746525 | 0.86[CHB][hapmap] |
| rs56656923 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57799507 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58751125 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6124743 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6124747 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6124748 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6130935 | 1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6130937 | 0.90[ASN][1000 genomes] |
| rs6130940 | 0.88[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap] |
| rs61341661 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61492353 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs811844 | 0.88[CHB][hapmap];0.83[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000221046 | Distal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014