SNP Report
Basic Infomation
| Name | rs57799507 dbSNP |
|---|---|
| Location | chr:20,44462924 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs56656923 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs58751125 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6124743 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6124747 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6124748 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6130931 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6130935 | 1.00[EUR][1000 genomes] |
| rs6130940 | 0.95[ASN][1000 genomes] |
| rs61341661 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61492353 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs810305 | 1.00[ASN][1000 genomes] |
| rs811844 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNNC2 | Proximal transcriptional regulation |
| SNX21 | Proximal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| PLTP | Distal transcriptional regulation |
| SPINT3 | Distal transcriptional regulation |
| UBE2C | Distal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| ZSWIM1 | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| SNX21 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014