SNP Report
Basic Infomation
| Name | rs6130940 dbSNP |
|---|---|
| Location | chr:20,44448292 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17446462 | 1.00[CEU][hapmap] |
| rs17446511 | 1.00[CEU][hapmap] |
| rs3746495 | 1.00[CHB][hapmap];0.94[CHD][hapmap] |
| rs4810475 | 1.00[CEU][hapmap] |
| rs4812969 | 1.00[CEU][hapmap] |
| rs4812973 | 1.00[CEU][hapmap] |
| rs56656923 | 1.00[ASN][1000 genomes] |
| rs57799507 | 0.95[ASN][1000 genomes] |
| rs58751125 | 0.95[ASN][1000 genomes] |
| rs59300060 | 0.90[EUR][1000 genomes] |
| rs6124747 | 1.00[ASN][1000 genomes] |
| rs6124748 | 0.95[ASN][1000 genomes] |
| rs6130931 | 0.88[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap] |
| rs6130937 | 0.81[EUR][1000 genomes] |
| rs61341661 | 0.95[ASN][1000 genomes] |
| rs73308431 | 0.87[EUR][1000 genomes] |
| rs742035 | 1.00[CEU][hapmap] |
| rs810305 | 0.95[ASN][1000 genomes] |
| rs811844 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| WFDC3 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| PLTP | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014