SNP Report
Basic Infomation
| Name | rs6104432 dbSNP |
|---|---|
| Location | chr:20,44652015 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11086991 | 1.00[LWK][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes] |
| rs11086992 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11086993 | 0.92[AFR][1000 genomes] |
| rs1111750 | 1.00[MEX][hapmap] |
| rs16990971 | 1.00[MEX][hapmap] |
| rs16991048 | 1.00[MEX][hapmap] |
| rs16991059 | 1.00[MEX][hapmap] |
| rs197663 | 1.00[MEX][hapmap] |
| rs197666 | 1.00[MEX][hapmap] |
| rs197667 | 1.00[MEX][hapmap] |
| rs2297194 | 1.00[MEX][hapmap] |
| rs3918260 | 1.00[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs3918265 | 0.88[AFR][1000 genomes] |
| rs3918266 | 0.94[AFR][1000 genomes] |
| rs6094240 | 0.92[AFR][1000 genomes] |
| rs6104433 | 1.00[LWK][hapmap];0.82[MKK][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs6104434 | 0.91[AFR][1000 genomes] |
| rs6130977 | 1.00[MEX][hapmap] |
| rs6130978 | 1.00[MEX][hapmap] |
| rs7272980 | 0.93[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000204044 | Proximal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014