SNP Report
Name | rs197663   dbSNP |
---|---|
Location | chr:20,44474973 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1111750 | 1.00[MEX][hapmap] |
rs11569648 | 1.00[EUR][1000 genomes] |
rs11569650 | 1.00[EUR][1000 genomes] |
rs11569652 | 1.00[EUR][1000 genomes] |
rs11569658 | 1.00[EUR][1000 genomes] |
rs169103 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16990971 | 1.00[MEX][hapmap] |
rs197664 | 0.99[AFR][1000 genomes] |
rs197665 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs197666 | 1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs197667 | 1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2077056 | 1.00[EUR][1000 genomes] |
rs2297194 | 1.00[MEX][hapmap] |
rs4518018 | 1.00[EUR][1000 genomes] |
rs453287 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs58234610 | 1.00[EUR][1000 genomes] |
rs6104432 | 1.00[MEX][hapmap] |
rs6130977 | 1.00[MEX][hapmap] |
rs6130978 | 1.00[MEX][hapmap] |
rs61352614 | 1.00[EUR][1000 genomes] |
rs73291275 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs811844 | 1.00[GIH][hapmap] |
Symbol | Regulation type |
---|---|
ZNF335 | Distal transcriptional regulation |
ACOT8 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
UPF3A | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014