SNP Report
Basic Infomation
| Name | rs197663 dbSNP |
|---|---|
| Location | chr:20,44474973 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1111750 | 1.00[MEX][hapmap] |
| rs11569648 | 1.00[EUR][1000 genomes] |
| rs11569650 | 1.00[EUR][1000 genomes] |
| rs11569652 | 1.00[EUR][1000 genomes] |
| rs11569658 | 1.00[EUR][1000 genomes] |
| rs169103 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16990971 | 1.00[MEX][hapmap] |
| rs197664 | 0.99[AFR][1000 genomes] |
| rs197665 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs197666 | 1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs197667 | 1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2077056 | 1.00[EUR][1000 genomes] |
| rs2297194 | 1.00[MEX][hapmap] |
| rs4518018 | 1.00[EUR][1000 genomes] |
| rs453287 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58234610 | 1.00[EUR][1000 genomes] |
| rs6104432 | 1.00[MEX][hapmap] |
| rs6130977 | 1.00[MEX][hapmap] |
| rs6130978 | 1.00[MEX][hapmap] |
| rs61352614 | 1.00[EUR][1000 genomes] |
| rs73291275 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs811844 | 1.00[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZNF335 | Distal transcriptional regulation |
| ACOT8 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| UPF3A | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014