SNP Report
Basic Infomation
| Name | rs6104012 dbSNP |
|---|---|
| Location | chr:20,43734571 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13041506 | 0.85[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs13042667 | 0.85[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs16989785 | 1.00[CHB][hapmap] |
| rs17422688 | 0.85[CEU][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs2157360 | 0.86[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs35828065 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6017488 | 0.85[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs6017489 | 0.89[EUR][1000 genomes] |
| rs6017491 | 0.81[AFR][1000 genomes] |
| rs6031991 | 0.94[ASW][hapmap];0.96[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs6094097 | 1.00[CHB][hapmap] |
| rs6094098 | 1.00[CHB][hapmap] |
| rs6094100 | 1.00[CHB][hapmap] |
| rs6104008 | 1.00[CHB][hapmap] |
| rs6104011 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6104014 | 1.00[CHB][hapmap] |
| rs6124690 | 0.88[ASW][hapmap];0.90[YRI][hapmap] |
| rs62206429 | 0.88[EUR][1000 genomes] |
| rs734784 | 0.82[ASW][hapmap] |
| rs763058 | 0.88[ASW][hapmap];0.83[LWK][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KCNS1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| ELMO2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014