SNP Report
Basic Infomation
| Name | rs6017489 dbSNP |
|---|---|
| Location | chr:20,43731932 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 34)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13038342 | 0.82[ASN][1000 genomes] |
| rs13038485 | 0.88[ASN][1000 genomes] |
| rs13041506 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13042667 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13042694 | 0.82[ASN][1000 genomes] |
| rs13042991 | 0.88[ASN][1000 genomes] |
| rs13043809 | 0.88[ASN][1000 genomes] |
| rs13044116 | 0.88[ASN][1000 genomes] |
| rs13044826 | 0.82[ASN][1000 genomes] |
| rs17331776 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17332243 | 0.88[ASN][1000 genomes] |
| rs17333103 | 0.82[ASN][1000 genomes] |
| rs17422688 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17423617 | 0.88[ASN][1000 genomes] |
| rs34313230 | 0.88[ASN][1000 genomes] |
| rs34622539 | 0.88[ASN][1000 genomes] |
| rs34855539 | 0.82[ASN][1000 genomes] |
| rs34919068 | 0.88[ASN][1000 genomes] |
| rs35227660 | 0.88[ASN][1000 genomes] |
| rs35476703 | 0.82[ASN][1000 genomes] |
| rs35632684 | 0.82[ASN][1000 genomes] |
| rs35828065 | 0.89[EUR][1000 genomes] |
| rs55767422 | 0.82[ASN][1000 genomes] |
| rs56191952 | 0.82[ASN][1000 genomes] |
| rs6017488 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6017495 | 0.88[ASN][1000 genomes] |
| rs6032006 | 0.88[ASN][1000 genomes] |
| rs6104011 | 0.89[EUR][1000 genomes] |
| rs6104012 | 0.89[EUR][1000 genomes] |
| rs62206429 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs62206432 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs62208416 | 0.82[ASN][1000 genomes] |
| rs73907811 | 0.82[ASN][1000 genomes] |
| rs74174932 | 0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KCNS1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014