SNP Report
Basic Infomation
| Name | rs13038342 dbSNP |
|---|---|
| Location | chr:20,43800232 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 68)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13037087 | 1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.89[MEX][hapmap];0.96[TSI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs13038434 | 0.83[EUR][1000 genomes] |
| rs13038485 | 0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13041506 | 0.82[ASN][1000 genomes] |
| rs13042667 | 0.82[ASN][1000 genomes] |
| rs13042694 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13042991 | 0.84[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13043809 | 0.85[GIH][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13044116 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs13044826 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17331776 | 0.82[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17332243 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17333103 | 1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17333180 | 1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17333381 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs17333555 | 0.90[ASW][hapmap];0.85[CEU][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.89[MEX][hapmap];0.90[MKK][hapmap];0.96[TSI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs17422688 | 0.85[GIH][hapmap];0.82[ASN][1000 genomes] |
| rs17423617 | 0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17424356 | 0.93[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs17424696 | 0.85[CEU][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1997892 | 1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.89[MEX][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2233882 | 0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2233895 | 0.82[EUR][1000 genomes] |
| rs2233896 | 0.89[ASW][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.89[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs2233898 | 0.87[EUR][1000 genomes] |
| rs2233901 | 0.89[ASW][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.89[MEX][hapmap];0.83[EUR][1000 genomes] |
| rs2664581 | 1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];0.89[MEX][hapmap];0.90[MKK][hapmap];0.92[TSI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs34274189 | 0.84[EUR][1000 genomes] |
| rs34293545 | 0.82[EUR][1000 genomes] |
| rs34313230 | 0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs34622539 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs34685021 | 0.81[EUR][1000 genomes] |
| rs34855539 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34885285 | 0.93[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs34919068 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs35227660 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs35284867 | 0.87[EUR][1000 genomes] |
| rs35476703 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35632684 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35751129 | 0.87[EUR][1000 genomes] |
| rs35869085 | 0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs55726011 | 0.83[EUR][1000 genomes] |
| rs55767422 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56168207 | 0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs56191952 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6017488 | 0.85[GIH][hapmap];0.82[ASN][1000 genomes] |
| rs6017489 | 0.82[ASN][1000 genomes] |
| rs6017495 | 0.85[GIH][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6017510 | 0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6017511 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6017512 | 0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6017513 | 1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.89[MEX][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6017519 | 1.00[CHD][hapmap];0.89[GIH][hapmap];0.89[MEX][hapmap];0.80[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs6032006 | 0.83[CEU][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6032055 | 1.00[ASW][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.89[MEX][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6032059 | 0.87[EUR][1000 genomes] |
| rs6032060 | 0.87[EUR][1000 genomes] |
| rs6032061 | 0.87[EUR][1000 genomes] |
| rs6032063 | 0.83[EUR][1000 genomes] |
| rs6032064 | 0.83[EUR][1000 genomes] |
| rs6032065 | 0.87[EUR][1000 genomes] |
| rs6032066 | 0.87[EUR][1000 genomes] |
| rs6032067 | 0.86[EUR][1000 genomes] |
| rs62205501 | 0.86[EUR][1000 genomes] |
| rs62206432 | 0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62208416 | 0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73907811 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74174932 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PI3 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014