SNP Report

Basic Infomation

Name	rs17423617 dbSNP
Location	chr:20,43768050
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 46)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs13037087	0.84[EUR][1000 genomes]
rs13038342	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13038485	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13041506	0.88[ASN][1000 genomes]
rs13042667	0.88[ASN][1000 genomes]
rs13042694	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13042991	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13043809	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13044116	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13044826	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17331776	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17332243	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17333103	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17333180	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17333381	0.86[EUR][1000 genomes]
rs17333555	0.86[EUR][1000 genomes]
rs17422688	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17424696	0.86[EUR][1000 genomes]
rs1997892	0.86[EUR][1000 genomes]
rs2233882	0.84[EUR][1000 genomes]
rs2664581	0.86[EUR][1000 genomes]
rs34313230	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34622539	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34855539	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34885285	0.84[EUR][1000 genomes]
rs34919068	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35227660	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35476703	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35632684	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35869085	0.86[EUR][1000 genomes]
rs55767422	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56168207	0.87[EUR][1000 genomes]
rs56191952	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6017488	0.88[ASN][1000 genomes]
rs6017489	0.88[ASN][1000 genomes]
rs6017495	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6017510	0.84[EUR][1000 genomes]
rs6017511	0.84[EUR][1000 genomes]
rs6017512	0.84[EUR][1000 genomes]
rs6017513	0.84[EUR][1000 genomes]
rs6032006	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032055	0.84[EUR][1000 genomes]
rs62206432	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62208416	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73907811	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74174932	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000233352	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)