SNP Report

Basic Infomation

Name	rs17422688 dbSNP
Location	chr:20,43739119
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 40)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10485454	1.00[MEX][hapmap]
rs13038342	0.85[GIH][hapmap];0.82[ASN][1000 genomes]
rs13038485	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13038635	1.00[MEX][hapmap]
rs13041506	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13042667	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13042694	0.82[ASN][1000 genomes]
rs13042991	0.84[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13043809	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13044116	0.92[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13044826	0.85[GIH][hapmap];0.82[ASN][1000 genomes]
rs17331776	0.84[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17332243	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17333103	0.85[GIH][hapmap];0.82[ASN][1000 genomes]
rs17333180	0.85[GIH][hapmap]
rs17333555	0.85[GIH][hapmap]
rs17423617	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1997892	0.85[GIH][hapmap]
rs2664581	0.85[GIH][hapmap]
rs34313230	0.88[ASN][1000 genomes]
rs34622539	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34855539	0.82[ASN][1000 genomes]
rs34919068	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35227660	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35476703	0.82[ASN][1000 genomes]
rs35632684	0.82[ASN][1000 genomes]
rs35828065	0.84[EUR][1000 genomes]
rs55767422	0.82[ASN][1000 genomes]
rs56191952	0.82[ASN][1000 genomes]
rs6017488	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6017489	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6017495	1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6032006	0.83[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6104011	0.84[EUR][1000 genomes]
rs6104012	0.85[CEU][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs62206429	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62206432	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62208416	0.82[ASN][1000 genomes]
rs73907811	0.82[ASN][1000 genomes]
rs74174932	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
WFDC5	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
SNAPIN	SCAN
LOC79015	SCAN
ELMO2	SCAN