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rVarBase
SNP Report
Basic Infomation
Name
rs62206429  
dbSNP
Location
chr:20,43730333
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs13041506
0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13042667
0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17331776
0.86[EUR][1000 genomes]
rs17422688
0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35828065
0.88[EUR][1000 genomes]
rs6017488
0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6017489
0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6104011
0.88[EUR][1000 genomes]
rs6104012
0.88[EUR][1000 genomes]
rs62206432
0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
KCNS1
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)