SNP Report
Name | rs6017488   dbSNP |
---|---|
Location | chr:20,43731022 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10485454 | 1.00[MEX][hapmap] |
rs13038342 | 0.85[GIH][hapmap];0.82[ASN][1000 genomes] |
rs13038485 | 0.88[ASN][1000 genomes] |
rs13038635 | 1.00[MEX][hapmap] |
rs13041506 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13042667 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13042694 | 0.82[ASN][1000 genomes] |
rs13042991 | 0.84[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs13043809 | 0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs13044116 | 0.92[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs13044826 | 0.85[GIH][hapmap];0.82[ASN][1000 genomes] |
rs17331776 | 0.84[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17332243 | 0.88[ASN][1000 genomes] |
rs17333103 | 0.85[GIH][hapmap];0.82[ASN][1000 genomes] |
rs17333180 | 0.85[GIH][hapmap] |
rs17333555 | 0.85[GIH][hapmap] |
rs17422688 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17423617 | 0.88[ASN][1000 genomes] |
rs1997892 | 0.85[GIH][hapmap] |
rs2664581 | 0.85[GIH][hapmap] |
rs34313230 | 0.88[ASN][1000 genomes] |
rs34622539 | 0.88[ASN][1000 genomes] |
rs34855539 | 0.82[ASN][1000 genomes] |
rs34919068 | 0.88[ASN][1000 genomes] |
rs35227660 | 0.88[ASN][1000 genomes] |
rs35476703 | 0.82[ASN][1000 genomes] |
rs35632684 | 0.82[ASN][1000 genomes] |
rs35828065 | 0.89[EUR][1000 genomes] |
rs55767422 | 0.82[ASN][1000 genomes] |
rs56191952 | 0.82[ASN][1000 genomes] |
rs6017489 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6017495 | 1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs6032006 | 0.83[CEU][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
rs6104011 | 0.89[EUR][1000 genomes] |
rs6104012 | 0.85[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes] |
rs62206429 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs62206432 | 0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs62208416 | 0.82[ASN][1000 genomes] |
rs73907811 | 0.82[ASN][1000 genomes] |
rs74174932 | 0.88[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
KCNS1 | Proximal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014