SNP Report

Basic Infomation

Name	rs17424356 dbSNP
Location	chr:20,43804190
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 39)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs13037087	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13038342	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13042694	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs13044826	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17333103	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17333180	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17333381	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17333555	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17424696	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1997892	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2233882	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2233896	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2233898	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2664581	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34274189	0.80[EUR][1000 genomes]
rs34855539	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34885285	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35284867	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35476703	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35632684	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35751129	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35869085	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55767422	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs56168207	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56191952	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6017510	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6017511	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6017512	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6017513	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6032055	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6032059	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6032060	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6032061	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6032065	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6032066	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6032067	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62205501	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62208416	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73907811	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
PI3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)