SNP Report

Basic Infomation

Name	rs34293545 dbSNP
Location	chr:20,43848610
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 47)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs13037087	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13038342	0.82[EUR][1000 genomes]
rs13038434	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13042694	0.82[EUR][1000 genomes]
rs13044826	0.82[EUR][1000 genomes]
rs17333103	0.82[EUR][1000 genomes]
rs17333180	0.82[EUR][1000 genomes]
rs17333381	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17333555	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17424696	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1997892	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2233882	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2233895	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2233896	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2233898	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2233901	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2664581	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34274189	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34685021	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34855539	0.82[EUR][1000 genomes]
rs34885285	0.87[EUR][1000 genomes]
rs35284867	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35476703	0.82[EUR][1000 genomes]
rs35632684	0.82[EUR][1000 genomes]
rs35751129	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35869085	0.89[EUR][1000 genomes]
rs55726011	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55767422	0.82[EUR][1000 genomes]
rs56168207	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56191952	0.82[EUR][1000 genomes]
rs6017510	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6017511	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6017512	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6017513	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6017519	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032055	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6032059	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032060	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032061	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032063	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032064	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032065	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032066	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6032067	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62205501	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62208416	0.82[EUR][1000 genomes]
rs73907811	0.82[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
SEMG2	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)