SNP Report
Basic Infomation
| Name | rs6104008 dbSNP |
|---|---|
| Location | chr:20,43731170 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11906376 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11906794 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11908316 | 0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs16989785 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2032514 | 0.95[ASN][1000 genomes] |
| rs56213252 | 0.91[ASN][1000 genomes] |
| rs60101853 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6094093 | 0.88[LWK][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes] |
| rs6094097 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs6094098 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[ASN][1000 genomes] |
| rs6094100 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6103988 | 1.00[JPT][hapmap] |
| rs6104010 | 0.95[ASN][1000 genomes] |
| rs6104012 | 1.00[CHB][hapmap] |
| rs6104014 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs61306439 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73910118 | 0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KCNS1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014