SNP Report
Basic Infomation
| Name | rs11908316 dbSNP |
|---|---|
| Location | chr:20,43730896 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11906376 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11906794 | 0.83[EUR][1000 genomes] |
| rs11908282 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2032514 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56213252 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs60101853 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6094097 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6094098 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6094100 | 0.86[ASN][1000 genomes] |
| rs6104008 | 0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6104010 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6104014 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs61306439 | 0.84[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73910118 | 0.89[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KCNS1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014