SNP Report
Basic Infomation
| Name | rs16989785 dbSNP |
|---|---|
| Location | chr:20,43804132 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs16989837 | 0.93[YRI][hapmap] |
| rs16989882 | 0.86[YRI][hapmap] |
| rs16989887 | 0.83[YRI][hapmap] |
| rs2032514 | 0.90[EUR][1000 genomes] |
| rs2071650 | 0.93[YRI][hapmap] |
| rs2233879 | 0.86[YRI][hapmap];0.89[AFR][1000 genomes] |
| rs2233903 | 0.83[YRI][hapmap] |
| rs2267863 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56213252 | 0.90[EUR][1000 genomes] |
| rs60165952 | 0.89[AFR][1000 genomes] |
| rs6094097 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes] |
| rs6094098 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes] |
| rs6094100 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes] |
| rs6103988 | 1.00[JPT][hapmap] |
| rs6104008 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6104010 | 0.90[EUR][1000 genomes] |
| rs6104012 | 1.00[CHB][hapmap] |
| rs6104014 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes] |
| rs61306439 | 1.00[EUR][1000 genomes] |
| rs73907830 | 0.93[AFR][1000 genomes] |
| rs73910118 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PI3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014