SNP Report

Basic Infomation

Name	rs2233903 dbSNP
Location	chr:20,43851108
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 30)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11906732	0.84[ASN][1000 genomes]
rs12479907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989785	0.83[YRI][hapmap]
rs16989837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989882	0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16989887	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2071650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2071651	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs2206887	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs2206889	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs2233107	0.93[ASN][1000 genomes]
rs2233879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2267863	0.88[ASN][1000 genomes]
rs2743330	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs2743334	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs3761194	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs41463948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4359712	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs58721236	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60165952	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6032073	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs6032087	0.82[JPT][hapmap]
rs60478948	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6094110	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs6094123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6104065	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs6104069	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs73907830	0.88[ASN][1000 genomes]
rs73907865	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73907894	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SEMG2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)