SNP Report
Basic Infomation
| Name | rs2233107 dbSNP |
|---|---|
| Location | chr:20,43922403 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11906732 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12479907 | 0.93[ASN][1000 genomes] |
| rs12481004 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs16989837 | 0.93[ASN][1000 genomes] |
| rs16989882 | 0.89[ASN][1000 genomes] |
| rs16989887 | 0.93[ASN][1000 genomes] |
| rs2071650 | 0.93[ASN][1000 genomes] |
| rs2233879 | 0.89[ASN][1000 genomes] |
| rs2233903 | 0.93[ASN][1000 genomes] |
| rs2267863 | 0.82[ASN][1000 genomes] |
| rs41463948 | 0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs58721236 | 0.93[ASN][1000 genomes] |
| rs60165952 | 0.89[ASN][1000 genomes] |
| rs60478948 | 0.93[ASN][1000 genomes] |
| rs6094123 | 0.93[ASN][1000 genomes] |
| rs73907830 | 0.82[ASN][1000 genomes] |
| rs73907865 | 0.93[ASN][1000 genomes] |
| rs73907894 | 0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MATN4 | Proximal transcriptional regulation |
| NCL | Distal transcriptional regulation |
| STK4-AS1 | Distal transcriptional regulation |
| STK4 | Distal transcriptional regulation |
| PABPC1L | Distal transcriptional regulation |
| MATN4 | Distal transcriptional regulation |
| MATN4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014