SNP Report
Basic Infomation
| Name | rs6094123 dbSNP |
|---|---|
| Location | chr:20,43901115 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11906732 | 0.84[ASN][1000 genomes] |
| rs12479907 | 1.00[ASN][1000 genomes] |
| rs16989837 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs16989882 | 0.95[ASN][1000 genomes] |
| rs16989887 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs2071650 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs2071651 | 0.85[CHB][hapmap];0.82[JPT][hapmap] |
| rs2206887 | 0.85[CHB][hapmap];0.82[JPT][hapmap] |
| rs2206889 | 0.85[CHB][hapmap];0.82[JPT][hapmap] |
| rs2233107 | 0.93[ASN][1000 genomes] |
| rs2233879 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs2233903 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs2267863 | 0.88[ASN][1000 genomes] |
| rs2743330 | 0.85[CHB][hapmap];0.82[JPT][hapmap] |
| rs2743334 | 0.85[CHB][hapmap];0.82[JPT][hapmap] |
| rs3761194 | 0.85[CHB][hapmap];0.82[JPT][hapmap] |
| rs41463948 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs4359712 | 0.85[CHB][hapmap];0.82[JPT][hapmap] |
| rs58721236 | 1.00[ASN][1000 genomes] |
| rs60165952 | 0.95[ASN][1000 genomes] |
| rs6032073 | 0.85[CHB][hapmap];0.82[JPT][hapmap] |
| rs6032087 | 0.82[JPT][hapmap] |
| rs60478948 | 1.00[ASN][1000 genomes] |
| rs6094110 | 0.85[CHB][hapmap];0.82[JPT][hapmap] |
| rs6104065 | 0.85[CHB][hapmap];0.82[JPT][hapmap] |
| rs6104069 | 0.85[CHB][hapmap];0.82[JPT][hapmap] |
| rs73907830 | 0.88[ASN][1000 genomes] |
| rs73907865 | 1.00[ASN][1000 genomes] |
| rs73907894 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLPI | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014