SNP Report

Basic Infomation

Name	rs2071651 dbSNP
Location	chr:20,43853153
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 55)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs13037087	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs16989837	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs16989887	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs17333103	0.81[CEU][hapmap]
rs17333180	0.81[CEU][hapmap]
rs17333555	0.87[CEU][hapmap]
rs17424696	0.88[CEU][hapmap]
rs1997892	0.87[CEU][hapmap]
rs2071650	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs2206887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2206888	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2206889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2233879	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs2233882	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs2233895	0.81[CEU][hapmap]
rs2233896	0.81[CEU][hapmap]
rs2233898	0.81[CEU][hapmap]
rs2233901	0.81[CEU][hapmap]
rs2233903	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs2664581	0.87[CEU][hapmap]
rs2743330	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2743334	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2743371	0.93[ASN][1000 genomes]
rs35343177	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35665166	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3761192	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3761193	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3761194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs41463948	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs4359712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4525753	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57047308	0.98[ASN][1000 genomes]
rs6017510	0.81[EUR][1000 genomes]
rs6017511	0.81[EUR][1000 genomes]
rs6017512	0.81[EUR][1000 genomes]
rs6017513	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs6017519	0.81[CEU][hapmap]
rs6017527	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6032055	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs6032059	0.83[CEU][hapmap]
rs6032061	0.81[CEU][hapmap]
rs6032063	0.81[CEU][hapmap]
rs6032064	0.81[CEU][hapmap]
rs6032065	0.81[CEU][hapmap]
rs6032066	0.81[CEU][hapmap]
rs6032073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6032075	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6032076	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6032087	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[ASN][1000 genomes]
rs6094110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6094123	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs6104065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6104069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6104085	0.98[ASN][1000 genomes]
rs62205502	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SEMG2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)