SNP Report
Basic Infomation
| Name | rs2743371 dbSNP |
|---|---|
| Location | chr:20,43921742 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2071651 | 0.93[ASN][1000 genomes] |
| rs2206887 | 0.90[ASN][1000 genomes] |
| rs2206888 | 0.95[ASN][1000 genomes] |
| rs2206889 | 0.95[ASN][1000 genomes] |
| rs2743330 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2743334 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35343177 | 0.93[ASN][1000 genomes] |
| rs35665166 | 0.95[ASN][1000 genomes] |
| rs3761192 | 0.92[ASN][1000 genomes] |
| rs3761193 | 0.95[ASN][1000 genomes] |
| rs3761194 | 0.95[ASN][1000 genomes] |
| rs4359712 | 0.95[ASN][1000 genomes] |
| rs4525753 | 0.95[ASN][1000 genomes] |
| rs57047308 | 0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6017527 | 0.95[ASN][1000 genomes] |
| rs6032073 | 0.95[ASN][1000 genomes] |
| rs6032075 | 0.95[ASN][1000 genomes] |
| rs6032076 | 0.95[ASN][1000 genomes] |
| rs6032087 | 0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6094110 | 0.95[ASN][1000 genomes] |
| rs6104065 | 0.93[ASN][1000 genomes] |
| rs6104069 | 0.93[ASN][1000 genomes] |
| rs6104085 | 0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs62205502 | 0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| STK4-AS1 | Distal transcriptional regulation |
| STK4 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014