SNP Report
Basic Infomation
| Name | rs55999745 dbSNP |
|---|---|
| Location | chr:14,68305861 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 123)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10130919 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10131048 | 0.86[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10132318 | 0.85[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10133239 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10135927 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10137614 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10137930 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10141589 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10141638 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs10146380 | 0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10150007 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1015023 | 0.85[ASN][1000 genomes] |
| rs1040598 | 0.87[AMR][1000 genomes] |
| rs10873208 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11158693 | 0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11158694 | 0.87[AMR][1000 genomes] |
| rs11158695 | 0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11158697 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11158700 | 0.82[AMR][1000 genomes] |
| rs11158701 | 0.82[AMR][1000 genomes] |
| rs11620947 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11622521 | 0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11622535 | 0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11623756 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11624166 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11626332 | 0.85[AMR][1000 genomes] |
| rs11626590 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11626594 | 0.85[ASN][1000 genomes] |
| rs11626769 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11626778 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11627100 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11627417 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11844492 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11847628 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12431490 | 0.81[AMR][1000 genomes] |
| rs12433710 | 0.80[AMR][1000 genomes] |
| rs12434751 | 0.81[AMR][1000 genomes] |
| rs12586329 | 0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12588401 | 0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12886915 | 0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12891047 | 0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12891164 | 0.91[AMR][1000 genomes] |
| rs12892221 | 0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12893157 | 0.87[AMR][1000 genomes] |
| rs12896666 | 0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1543391 | 0.91[AMR][1000 genomes] |
| rs17783094 | 0.94[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17783124 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17783160 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1810523 | 0.88[AMR][1000 genomes] |
| rs181561 | 0.90[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs181562 | 0.90[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs181563 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs181564 | 0.90[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs181565 | 0.90[AMR][1000 genomes] |
| rs181566 | 0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs181567 | 0.91[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs181570 | 0.91[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs181572 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs181574 | 0.91[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs181575 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs181576 | 0.91[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs1950769 | 0.85[ASN][1000 genomes] |
| rs1955470 | 0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1956345 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1956346 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1956347 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1956348 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1964828 | 0.86[AMR][1000 genomes] |
| rs2235962 | 0.83[AMR][1000 genomes] |
| rs2235963 | 0.86[AMR][1000 genomes] |
| rs2235965 | 0.83[AMR][1000 genomes] |
| rs2235966 | 0.84[AMR][1000 genomes] |
| rs2295106 | 0.86[AMR][1000 genomes] |
| rs2295107 | 0.86[AMR][1000 genomes] |
| rs2331403 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs28373844 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28604984 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28623567 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28713367 | 0.81[AMR][1000 genomes] |
| rs2874131 | 0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2874132 | 0.83[AMR][1000 genomes] |
| rs35272075 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4143685 | 0.87[AMR][1000 genomes] |
| rs4284565 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4402486 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4902517 | 0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4902518 | 0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4902519 | 0.86[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7142433 | 0.90[AMR][1000 genomes] |
| rs7143496 | 0.89[AMR][1000 genomes] |
| rs7149482 | 0.94[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7151091 | 0.88[ASN][1000 genomes] |
| rs7151495 | 0.87[AMR][1000 genomes] |
| rs7154635 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7157288 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7159109 | 0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7159489 | 0.86[AMR][1000 genomes] |
| rs7159622 | 0.91[AMR][1000 genomes] |
| rs7160196 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs72723196 | 0.94[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72725103 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72725114 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72725127 | 0.81[AMR][1000 genomes] |
| rs764088 | 0.84[AMR][1000 genomes] |
| rs767972 | 0.82[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs8003431 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8004611 | 0.94[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs8006089 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs8009358 | 0.85[ASN][1000 genomes] |
| rs8009455 | 0.85[ASN][1000 genomes] |
| rs8010086 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs8011120 | 0.89[AMR][1000 genomes] |
| rs8011393 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs8011690 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs8012974 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs8017007 | 0.85[ASN][1000 genomes] |
| rs8017013 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8018709 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs932554 | 1.00[ASN][1000 genomes] |
| rs932555 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs961700 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs986382 | 0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAD51B | Proximal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014