SNP Report
Basic Infomation
| Name | rs11847628 dbSNP |
|---|---|
| Location | chr:14,68284075 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 138)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10130919 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10131048 | 0.88[CEU][hapmap];0.97[GIH][hapmap];0.80[MEX][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs10132318 | 0.88[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs10133239 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs10133262 | 0.80[CHB][hapmap];0.81[GIH][hapmap] |
| rs10135927 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10136790 | 0.80[CHB][hapmap] |
| rs10137614 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10137930 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10141589 | 0.81[EUR][1000 genomes] |
| rs10141638 | 0.89[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10143455 | 0.80[CHB][hapmap] |
| rs10143843 | 0.80[CHB][hapmap] |
| rs10146380 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10150007 | 0.89[EUR][1000 genomes] |
| rs1015023 | 0.81[GIH][hapmap];0.87[MEX][hapmap] |
| rs10483805 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10873208 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11158693 | 0.92[CEU][hapmap];0.97[GIH][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11158695 | 0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11158697 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11620947 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11622521 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11622535 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11622787 | 0.80[CHB][hapmap] |
| rs11623756 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11624166 | 0.86[GIH][hapmap];0.82[AMR][1000 genomes] |
| rs11626590 | 0.87[EUR][1000 genomes] |
| rs11626594 | 0.81[GIH][hapmap];0.94[MEX][hapmap] |
| rs11626769 | 0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11626778 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11627100 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11627417 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11844492 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11844529 | 0.80[CHB][hapmap] |
| rs11846344 | 0.80[CHB][hapmap] |
| rs11850191 | 0.80[CHB][hapmap] |
| rs11852180 | 0.80[CHB][hapmap] |
| rs12100584 | 0.80[CHB][hapmap] |
| rs12431697 | 0.80[CHB][hapmap] |
| rs12437178 | 0.80[CHB][hapmap] |
| rs12586329 | 0.82[AMR][1000 genomes] |
| rs12588401 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12886915 | 0.88[CEU][hapmap];0.97[GIH][hapmap];0.80[MEX][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12891047 | 0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12891164 | 0.80[EUR][1000 genomes] |
| rs12892221 | 0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12896666 | 0.88[CEU][hapmap];0.80[MEX][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1543391 | 0.81[GIH][hapmap] |
| rs17104764 | 0.80[CHB][hapmap] |
| rs17104776 | 0.80[CHB][hapmap] |
| rs17104800 | 0.80[CHB][hapmap] |
| rs17783094 | 0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs17783124 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs17783160 | 1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs181561 | 0.81[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs181562 | 0.83[EUR][1000 genomes] |
| rs181563 | 0.92[CEU][hapmap];1.00[GIH][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs181564 | 0.81[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs181565 | 0.82[GIH][hapmap];0.82[EUR][1000 genomes] |
| rs181566 | 0.92[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs181567 | 0.83[EUR][1000 genomes] |
| rs181570 | 0.81[CEU][hapmap];0.82[GIH][hapmap];0.83[EUR][1000 genomes] |
| rs181572 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs181574 | 0.83[EUR][1000 genomes] |
| rs181575 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs181576 | 0.81[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs1950769 | 0.81[GIH][hapmap];0.87[MEX][hapmap] |
| rs1955470 | 0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1956345 | 1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1956346 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1956347 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1956348 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2235962 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.92[JPT][hapmap];0.80[MEX][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2235963 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2235965 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2235966 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes] |
| rs2295108 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2331403 | 0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs28373844 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs28604984 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs28623567 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2874131 | 0.88[CEU][hapmap];0.97[GIH][hapmap];0.80[MEX][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2877369 | 0.80[CHB][hapmap] |
| rs35272075 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs3742885 | 0.95[CHD][hapmap];0.84[JPT][hapmap] |
| rs4284565 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4402486 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4569184 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4902517 | 0.88[CEU][hapmap];0.97[GIH][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4902518 | 0.81[AMR][1000 genomes] |
| rs4902519 | 0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4902523 | 0.95[CHD][hapmap];0.84[JPT][hapmap] |
| rs4902535 | 0.80[CHB][hapmap] |
| rs4902536 | 0.80[CHB][hapmap] |
| rs4902538 | 0.80[CHB][hapmap] |
| rs4902540 | 0.80[CHB][hapmap] |
| rs55999745 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6573805 | 0.80[CHB][hapmap] |
| rs7142112 | 0.80[CHB][hapmap] |
| rs7142210 | 0.80[CHB][hapmap] |
| rs7142433 | 0.80[EUR][1000 genomes] |
| rs7143496 | 0.81[GIH][hapmap] |
| rs7146354 | 0.80[CHB][hapmap] |
| rs7149482 | 0.89[CEU][hapmap];0.82[GIH][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7149796 | 0.84[JPT][hapmap] |
| rs7151091 | 0.86[GIH][hapmap];0.87[MEX][hapmap] |
| rs7154635 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7154646 | 0.80[CHB][hapmap] |
| rs7155097 | 0.80[CHB][hapmap] |
| rs7155840 | 0.80[CHB][hapmap] |
| rs7157288 | 0.82[AMR][1000 genomes] |
| rs7158544 | 0.80[CHB][hapmap] |
| rs7159109 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7159622 | 0.80[EUR][1000 genomes] |
| rs7160196 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72723196 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs72725103 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs72725114 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs767972 | 0.88[CEU][hapmap];0.97[GIH][hapmap];0.80[MEX][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs8003431 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs8004611 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs8006089 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8007989 | 0.84[JPT][hapmap] |
| rs8010086 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs8011120 | 0.84[CEU][hapmap] |
| rs8011393 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs8011690 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8012974 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs8015595 | 0.84[JPT][hapmap] |
| rs8016525 | 0.80[CHB][hapmap] |
| rs8017013 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs8018709 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9323501 | 0.80[CHB][hapmap] |
| rs932555 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs961700 | 0.86[GIH][hapmap] |
| rs9672142 | 0.80[CHB][hapmap] |
| rs986382 | 0.84[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFYVE26 | Proximal transcriptional regulation |
| RAD51B | Proximal transcriptional regulation |
| RAD51B | Distal transcriptional regulation |
| RDH12 | Distal transcriptional regulation |
| ZFP36L1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014