SNP Report

Basic Infomation

Name	rs2235965 dbSNP
Location	chr:14,68249033
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 118)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10130919	0.88[CEU][hapmap];0.83[AMR][1000 genomes]
rs10131048	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10132318	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10133239	0.83[AMR][1000 genomes]
rs10133262	0.80[CHB][hapmap]
rs10136790	0.80[CHB][hapmap]
rs10137614	0.82[AMR][1000 genomes]
rs10137930	0.82[AMR][1000 genomes]
rs10146380	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs10148527	0.80[CHB][hapmap]
rs1040598	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10483805	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873208	0.83[AMR][1000 genomes]
rs11158693	0.89[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11158694	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11158695	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11158697	0.83[AMR][1000 genomes]
rs11620947	0.93[ASN][1000 genomes]
rs11621019	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs11622535	0.82[AMR][1000 genomes]
rs11623756	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs11626778	0.82[AMR][1000 genomes]
rs11627100	0.83[AMR][1000 genomes]
rs11627417	0.83[AMR][1000 genomes]
rs11844492	0.83[AMR][1000 genomes]
rs11844529	0.80[CHB][hapmap]
rs11847628	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11852180	0.80[CHB][hapmap]
rs12100584	0.80[CHB][hapmap]
rs12431697	0.80[CHB][hapmap]
rs12433710	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs12586329	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12588401	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12886915	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12891047	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12891164	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12892221	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12893157	0.88[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12896666	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1543391	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17104764	0.80[CHB][hapmap]
rs17104776	0.80[CHB][hapmap]
rs17104800	0.80[CHB][hapmap]
rs17783124	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs17783160	0.95[CEU][hapmap];0.83[AMR][1000 genomes]
rs1810523	0.89[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs181561	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs181562	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs181563	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs181564	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs181565	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs181566	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs181567	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs181570	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs181572	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs181574	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs181575	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs181576	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1955470	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1956345	0.88[CEU][hapmap];0.83[AMR][1000 genomes]
rs1956346	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1956347	0.83[AMR][1000 genomes]
rs1956348	0.83[AMR][1000 genomes]
rs1964828	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2235962	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2235963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2235966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2235967	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs2295106	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2295107	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2295108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2331403	0.90[ASN][1000 genomes]
rs28373844	0.82[AMR][1000 genomes]
rs28604984	0.82[AMR][1000 genomes]
rs28623567	0.82[AMR][1000 genomes]
rs2874131	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2874132	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2877369	0.80[CHB][hapmap]
rs3742885	0.84[JPT][hapmap]
rs4143685	0.89[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4402486	0.96[ASN][1000 genomes]
rs4436722	0.80[CHB][hapmap]
rs4569184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902517	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4902518	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4902519	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4902523	0.84[JPT][hapmap]
rs4902535	0.80[CHB][hapmap]
rs4902536	0.80[CHB][hapmap]
rs4902538	0.80[CHB][hapmap]
rs4902540	0.80[CHB][hapmap]
rs55999745	0.83[AMR][1000 genomes]
rs7142112	0.80[CHB][hapmap]
rs7142210	0.80[CHB][hapmap]
rs7142433	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7143496	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7146354	0.80[CHB][hapmap]
rs7149796	0.84[JPT][hapmap]
rs7154635	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs7155840	0.80[CHB][hapmap]
rs7159109	0.82[AMR][1000 genomes]
rs7159622	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7159982	0.84[EUR][1000 genomes]
rs7160196	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs767972	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8003431	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs8006089	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs8007989	0.84[JPT][hapmap]
rs8010086	0.88[ASN][1000 genomes]
rs8011120	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8011393	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs8011690	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8015595	0.84[JPT][hapmap]
rs8016525	0.80[CHB][hapmap]
rs8017013	0.88[CEU][hapmap];0.83[AMR][1000 genomes]
rs8018709	0.89[CEU][hapmap];0.82[AMR][1000 genomes]
rs9323501	0.80[CHB][hapmap]
rs932555	0.89[CEU][hapmap];0.82[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ZFYVE26	Proximal transcriptional regulation
ZFYVE26	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)