SNP Report

Basic Infomation

Name	rs11624166 dbSNP
Location	chr:14,68326535
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 107)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10130919	0.86[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10131048	0.86[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10132022	0.89[GIH][hapmap]
rs10132318	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10133239	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10133262	0.88[GIH][hapmap]
rs10137614	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10137930	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10143455	0.89[GIH][hapmap]
rs10146380	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10148527	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs1015023	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10873208	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11158693	0.86[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11158695	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11158697	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11158700	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11158701	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11620947	0.87[AMR][1000 genomes]
rs11622521	0.88[ASN][1000 genomes]
rs11622535	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11623355	0.89[GIH][hapmap]
rs11623756	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11626332	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11626594	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.92[MKK][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11626778	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11627100	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11627417	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11844492	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11846344	0.89[GIH][hapmap]
rs11847628	0.86[GIH][hapmap];0.82[AMR][1000 genomes]
rs11850191	0.89[GIH][hapmap]
rs12431490	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12431697	0.89[GIH][hapmap]
rs12432558	0.89[CEU][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs12434751	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12437178	0.89[GIH][hapmap]
rs12586329	0.83[ASN][1000 genomes]
rs12588401	0.83[ASN][1000 genomes]
rs12886915	0.86[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12891047	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12892221	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12896666	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17104681	0.88[CHD][hapmap]
rs17104700	0.88[CHD][hapmap]
rs17783124	0.86[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17783160	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs181563	0.86[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs181566	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs181572	0.84[AMR][1000 genomes]
rs181575	0.86[GIH][hapmap]
rs1950767	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1950769	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1955470	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1956345	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1956346	0.87[AMR][1000 genomes]
rs1956347	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1956348	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1980654	0.86[GIH][hapmap]
rs2235962	0.81[GIH][hapmap]
rs2235963	0.83[GIH][hapmap]
rs28373844	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28604984	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28623567	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28713367	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2874131	0.86[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs28855496	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3742884	0.88[CHD][hapmap]
rs4402486	0.84[AMR][1000 genomes]
rs4569184	0.83[GIH][hapmap]
rs4902517	0.86[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4902518	0.83[ASN][1000 genomes]
rs4902519	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4902533	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4902536	0.89[GIH][hapmap]
rs4902538	0.89[GIH][hapmap]
rs55999745	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7143521	0.88[CHD][hapmap]
rs7150705	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs7150860	0.88[CHD][hapmap]
rs7150903	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs7151091	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.87[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151495	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7154635	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7154646	0.89[GIH][hapmap]
rs7157288	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159109	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7160196	0.84[AMR][1000 genomes]
rs72725127	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs764088	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs767972	0.86[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs8003431	0.86[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8006089	0.86[GIH][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes]
rs8009358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009455	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010086	0.82[AMR][1000 genomes]
rs8011393	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs8011690	0.87[AMR][1000 genomes]
rs8013677	0.80[YRI][hapmap]
rs8017007	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8017013	0.86[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8018709	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8020795	0.89[GIH][hapmap]
rs932554	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs932555	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs961700	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs986382	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ZFP36L1	Distal transcriptional regulation
RAD51B	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)