SNP Report
Basic Infomation
| Name | rs72725127 dbSNP |
|---|---|
| Location | chr:14,68348297 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 88)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10130919 | 0.81[AMR][1000 genomes] |
| rs10133239 | 0.81[AMR][1000 genomes] |
| rs10135927 | 0.85[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10141638 | 0.85[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10146380 | 0.82[AMR][1000 genomes] |
| rs10148527 | 0.88[EUR][1000 genomes] |
| rs1015023 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs10873208 | 0.81[AMR][1000 genomes] |
| rs11158697 | 0.81[AMR][1000 genomes] |
| rs11158700 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11158701 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11158716 | 0.87[ASN][1000 genomes] |
| rs11622135 | 0.87[ASN][1000 genomes] |
| rs11624166 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11626332 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11626594 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11626769 | 0.84[AMR][1000 genomes] |
| rs11627100 | 0.81[AMR][1000 genomes] |
| rs11627417 | 0.81[AMR][1000 genomes] |
| rs11844492 | 0.81[AMR][1000 genomes] |
| rs11848769 | 0.87[ASN][1000 genomes] |
| rs11850946 | 0.87[ASN][1000 genomes] |
| rs11852208 | 0.87[ASN][1000 genomes] |
| rs12431490 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12432558 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12433779 | 0.86[ASN][1000 genomes] |
| rs12434751 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12435554 | 0.87[ASN][1000 genomes] |
| rs12437276 | 0.87[ASN][1000 genomes] |
| rs12891164 | 0.81[AMR][1000 genomes] |
| rs1543391 | 0.81[AMR][1000 genomes] |
| rs17192558 | 0.87[ASN][1000 genomes] |
| rs17192586 | 0.87[ASN][1000 genomes] |
| rs17783094 | 0.84[AMR][1000 genomes] |
| rs17783160 | 0.81[AMR][1000 genomes] |
| rs17783304 | 0.87[ASN][1000 genomes] |
| rs181567 | 0.81[AMR][1000 genomes] |
| rs181570 | 0.81[AMR][1000 genomes] |
| rs181574 | 0.81[AMR][1000 genomes] |
| rs181576 | 0.81[AMR][1000 genomes] |
| rs1950767 | 0.91[EUR][1000 genomes] |
| rs1950769 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1956345 | 0.81[AMR][1000 genomes] |
| rs1956347 | 0.81[AMR][1000 genomes] |
| rs1956348 | 0.81[AMR][1000 genomes] |
| rs28649231 | 0.81[ASN][1000 genomes] |
| rs28713367 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28855496 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs34588410 | 0.87[ASN][1000 genomes] |
| rs34723132 | 0.87[ASN][1000 genomes] |
| rs34759521 | 0.93[ASN][1000 genomes] |
| rs35272075 | 0.85[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs35803514 | 0.86[ASN][1000 genomes] |
| rs4284565 | 0.82[AMR][1000 genomes] |
| rs4902533 | 0.92[EUR][1000 genomes] |
| rs55867043 | 0.87[ASN][1000 genomes] |
| rs55999745 | 0.81[AMR][1000 genomes] |
| rs7142433 | 0.82[AMR][1000 genomes] |
| rs7145044 | 0.87[ASN][1000 genomes] |
| rs7149482 | 0.84[AMR][1000 genomes] |
| rs7150705 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7150903 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7151091 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7151495 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7151917 | 0.87[ASN][1000 genomes] |
| rs7155985 | 0.87[ASN][1000 genomes] |
| rs7157288 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7159184 | 0.82[EUR][1000 genomes] |
| rs7159622 | 0.81[AMR][1000 genomes] |
| rs72723196 | 0.84[AMR][1000 genomes] |
| rs72725103 | 0.84[AMR][1000 genomes] |
| rs72725114 | 0.85[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72725141 | 0.87[ASN][1000 genomes] |
| rs72725149 | 0.87[ASN][1000 genomes] |
| rs72725151 | 0.87[ASN][1000 genomes] |
| rs72725153 | 0.87[ASN][1000 genomes] |
| rs72725156 | 0.87[ASN][1000 genomes] |
| rs72725157 | 0.87[ASN][1000 genomes] |
| rs72725159 | 0.87[ASN][1000 genomes] |
| rs72725165 | 0.87[ASN][1000 genomes] |
| rs764088 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8009358 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs8009455 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs8012974 | 0.84[AMR][1000 genomes] |
| rs8017007 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs8017013 | 0.81[AMR][1000 genomes] |
| rs961700 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs986382 | 0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAD51B | Proximal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014